Developers - API
xcp_d-combineqc
Aggregate qc of all the subjects.
usage: xcp_d-combineqc [-h] xcpd_dir output_prefix
Positional Arguments
- xcpd_dir
xcp_d output dir
- output_prefix
output prefix for group
xcp_d.workflows
: Workflows
Nipype workflows for xcp_d.
The primary workflows for xcp_d. |
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Workflows for post-processing the BOLD data. |
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Workflows for post-processing CIFTI-format BOLD data. |
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Anatomical post-processing workflows. |
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Workflows for concatenating postprocessed data. |
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Workflows for extracting time series and computing functional connectivity. |
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Workflows for generating the executive summary. |
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Workflows for collecting and saving xcp_d outputs. |
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Plotting workflows. |
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Workflows for post-processing BOLD data. |
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Workflows for calculating resting state-specific metrics. |
xcp_d.interfaces
: Nipype Interfaces
Initialize interfaces.
ANTS interfaces. |
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Adapted interfaces from Niworkflows. |
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Convert3D is a command-line tool for converting 3D images between common file formats. |
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Interfaces for the concatenation workflow. |
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Handling functional connectvity. |
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Classes for building an executive summary file. |
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Interfaces for Nilearn code. |
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Plotting interfaces. |
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Interfaces for the post-processing workflows. |
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Tools for generating Reports. |
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Interfaces to generate reportlets. |
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Interfaces for working with resting-state fMRI data. |
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Miscellaneous utility interfaces. |
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Custom wb_command interfaces. |
xcp_d.utils
: Miscellaneous Utility Functions
A range of utility functions for xcp_d interfaces and workflows.
Functions for working with atlases. |
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Utilities for fmriprep bids derivatives and layout. |
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Functions for concatenating scans across runs. |
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Confound matrix selection based on Ciric et al. 2007. |
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Functions for converting DCAN-format derivatives to fMRIPrep format. |
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Functions for converting HCP-format data to fMRIPrep format. |
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Functions related to the documentation. |
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Functions for generating the executive summary. |
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Miscellaneous file manipulation functions. |
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Functions for interpolating over high-motion volumes. |
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Plotting tools. |
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Quality control metrics. |
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Functions for calculating resting-state derivatives (ReHo and ALFF). |
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Stripped out routines for Sentry. |
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Miscellaneous utility functions for xcp_d. |
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Utilities to read and write nifiti and cifti data. |